This interactive bulletin reports on the latest epidemiology of
COVID-19, influenza, respiratory syncytial virus (RSV) and other
respiratory viruses (ORVs) in Ireland. HPSC monitors several integrated
respiratory virus surveillance systems that are included in this
bulletin. This report will be published weekly during the winter season
(week 40 to week 20).
How to use this interactive bulletin
For interactive graphs – data values and labels can be seen by
hovering over graph lines or bars. Specific categories can be selected
or deselected by clicking on the relevant category in the legend.
Readers can skip to specific sections by clicking on the table of
contents to the left of the screen.
Key messages
During week 44 2024, influenza remained stable and RSV activity
increased, although the numbers of reported cases remain relatively low.
COVID-19 activity increased. Rhinoviruses and enteroviruses are
circulating at high levels. Other seasonal respiratory viruses remain at
low levels.
Summary for week 44
2024
Primary Care Surveillance
The sentinel GP Acute Respiratory Infection (ARI) consultation rate
declined, for the second week in a row, to 43.9/100,000 population
during week 44, compared to 64.4/100,000 in week 43. Sentinel percentage
positivity for rhinovirus or enterovirus was 24.3% in week 44. Rhino or
enterovirus positivity has been above the 10% positivity threshold since
week 35 2024. All other respiratory pathogens remain below the
threshold. The proportion of GPOOH calls for self-reported cough
increased for all age-groups and was over the threshold overall and for
those aged <15 years in week 44. Calls for self-reported flu cases
remain below the threshold.
COVID-19
COVID-19 activity increased across all indicators in week 44.
COVID-19 cases increased by 25.3% from 249 cases notified in week 43 to
312 cases in week 44. Hospitalised cases increased by 36.1%, with 132
cases in week 44 compared to 97 cases in week 43. This increase may be
partly due to delayed notifications in week 44. ICU admissions and
deaths remained low. KP.3.1.1 is the dominant sub-lineage, accounting
for 43.5% of samples sequenced between weeks 37 and 42, 2024. Emerging
variant XEC continues to increase and accounted for 20.6% of sequences
in the same time period. SARS-CoV-2 viral loads in wastewater decreased
in most catchment areas in week 44 2024.
Influenza
Influenza activity remained stable in week 44 2024. The overall
notification rate was 1.5/100,000 population, and was highest in those
aged less than one year. There were 79 cases (a slight decrease from 91
cases reported in week 43), 25 hospitalisations, no ICU cases and no
deaths reported. Influenza A virus is currently the dominant type
accounting for 92% of cases.
RSV
RSV activity increased in week 44 but numbers of reported cases
remain low. The overall notification rate was 0.8/100,000 population and
was highest in those aged less than one year at 20.8/100,000 population.
There were 39 cases (compared to 29 reported in week 43), 22
hospitalisations, no ICU admissions and no deaths reported. The number
of notified and hospitalised cases remain low in all age groups.
Severe Acute Respiratory Infection (SARI)
Based on data from the three sentinel hospital sites, although SARI
case numbers remained stable in week 44, with 58 cases reported (same as
the previous week), the incidence of SARI cases amongst total hospital
admissions (via emergency departments) increased by 33% due to an
increase amongst adult cases. In week 44, influenza positivity increased
to 14.6%, with no influenza positive cases reported in week 43, while
RSV increased slightly to 7.1% from 6.4%, while SARS-CoV-2 positivity
decreased to 2.4% from 14.9% in week 43.
Outbreaks
COVID-19 outbreaks increased by 20% in week 44 compared to week 43
2024. A total of 18 COVID-19 outbreaks were reported including five in
hospitals and nine in nursing homes. During week 44, one influenza A
outbreak and five other ARI outbreaks were reported in nursing homes. No
RSV outbreaks were reported.
Technical notes
General
Data are provisional and subject to ongoing review, validation and
update. As a result, figures in this report may differ from previously
published figures.
The weekly calendar runs from Sunday to Saturday for respiratory
virus notifications on CIDR (as per the Infectious Disease Regulations
1982 and subsequent amendments) and Monday to Sunday for the sentinel GP
and SARI surveillance systems (as per ISO week). Further information on
epidemiological dates and weeks can be found on the HPSC website.
Definitions
The case definitions for COVID-19, influenza and RSV are available
here. Only data on laboratory-confirmed cases, including cases diagnosed
using near patient molecular tests, are included in this report.
Sentinel GP ARI consultations are consultations to sentinel GP
practices for Acute Respiratory Infection (ARI), with ARI defined as
Sudden onset of symptoms AND at least one of the following four
respiratory symptoms: Cough, sore throat, shortness of breath, coryza
AND a clinician’s judgement that the illness is due to an infection.
GP out of hours calls refer to calls to GP out of hours services from
persons with self-reported clinical symptoms of ‘flu’ or ‘cough’.
Emergency Department cases refer to cases treated in emergency
departments, with no indication on CIDR that they have subsequently been
admitted to hospital.
Hospitalised cases are inpatients with laboratory confirmed
SARS-CoV-2, influenza or RSV and includes inpatients with incidental
infections, where the infection is not the reason for their
admission.
Bed occupancy refers to the number of laboratory confirmed cases
admitted to acute inpatient sites at 08:00 hrs on the day of
reporting.
A SARI case is defined as a person hospitalised for at least 24 hours
with acute respiratory infection, with at least one of the following
symptoms: cough, fever, shortness of breath OR sudden onset of anosmia,
ageusia or dysgeusia with onset of symptoms within 14 days prior to
hospital admission. A SARI case refers to an individual patient episode
of care.
As of September 2024, ICU admissions for COVID-19, influenza and RSV
refer to those admitted to intensive care where COVID-19, influenza or
RSV were the primary or contributory cause of admission. Prior to
September 2024, ICU admissions for influenza and RSV included all
admissions where the patient tested positive for influenza or RSV,
irrespective of whether these pathogens were the cause of admission.
COVID-19, influenza and RSV deaths are defined as a death in a person
with laboratory confirmed COVID-19, influenza or RSV infection see case
definitions (this includes cases detected postmortem) and where
COVID-19, influenza or RSV is reported in any of the four cause of death
fields on the death certificate. Deaths where there is a clear
alternative cause of death (e.g. trauma, suicide) are not recorded as
COVID-19/influenza/RSV deaths. Deaths where there is a period of
complete recovery (as assessed by a clinician) between a COVID-19,
influenza or RSV episode of illness and death, are also not recorded as
deaths.
Test Positivity: Positive tests refer to all positive specimens and
includes duplicates and individuals who were re-tested.
Outbreaks are defined as two or more cases of acute respiratory
infection with the same pathogen (SARS-CoV-2, influenza or respiratory
syncytial virus (RSV)) confirmed by a laboratory test or near patient
test carried out by a health professional, and where there is reason to
consider that these cases may be epidemiologically linked in place and
time.
Other Acute Respiratory Infection (ARI) outbreaks are defined as: Two
or more cases of acute respiratory infection arising within the same
48hr period epidemiologically linked in place: Outbreaks are classified
as Suspect ARI outbreaks, where testing has not been completed, is
pending or has been negative for Influenza, RSV and SARS-CoV-2.
Outbreaks are classified as confirmed if other respiratory pathogens
(ORVs), e.g. Rhinovirus, hMPV, Coronavirus OC43 etc are identified via
laboratory confirmation. The outbreak data presented in this report
includes both confirmed and suspect outbreaks.
Variant working definitions for ‘SARS-CoV-2 variants of concern’
(VOC), ‘SARS-CoV-2 variants of interest’ (VOI) and ‘SARS-CoV-2 variants
under monitoring’ (VUM) are available on the WHO
website and ECDC
website.
Data Sources
The Computerised Infectious Disease Reporting (CIDR) system: CIDR is
the source of statutory notification data on laboratory-confirmed
COVID-19, influenza, RSV (including data on notified, emergency
department, hospitalised and ICU cases and data on cases who died) and
data on outbreaks.
The type/subtype of laboratory confirmed influenza notifications are
reported on the CIDR system. The number of cases hospitalised and
admitted to ICU described in this report relate only to cases notified
during this reporting period, with known hospitalisation/ICU status at
the time of reporting.
Regional Departments of Public Health currently prioritise the
investigation and reporting of outbreaks in settings that benefit most
from public health and clinical intervention. The outbreak data reported
here focuses on these key settings/groups. These settings include acute
hospitals, nursing homes, community hospital/long-stay units,
residential institutions (centres for disabilities, centres for older
people, children’s/TUSLA residential centres and mental health
facilities) and other healthcare settings.
Population denominator data for analyses of CIDR data on notified,
emergency department, hospitalised and ICU cases and deaths are taken
from Census 2022.
Sentinel GP surveillance system: This includes 100 participating
general practices (located in all HSE Health Regions). These practices
report electronically on a weekly basis, the number of patients who
consulted with acute respiratory infection (ARI) and influenza-like
illness (ILI) (identified using International Classification of Primary
Care 2 codes R74 and R80). These practices provide overall and
age-stratified denominator data on the number of registered patients who
have sought care at the practice during the previous three years. The
combined patient population in these practices is estimated to be
approximately 10% of the national population. Sentinel GPs take a
combined nose and throat swab from the first five patients attending
their practice each week who meet the ARI case definition and send these
to the NVRL for testing.
GP Out-of-hours (GPOOHs) services: Five out of 14 GPOOHs services
provide weekly data on the total and age-stratified number of out of
hours calls for 1) all reasons, 2) for self-reported cough and 3) for
self-reported flu. The denominator for calculations of percentage of
calls is the total number of calls for all reasons.
The HSE Performance Management and Improvement Unit (PMIU) provides
daily data on bed occupancy (the number of currents inpatients with
laboratory confirmed COVID-19, influenza and RSV).
Severe Acute Respiratory Infections (SARI) surveillance system: SARI
cases are identified from new admissions through the Emergency
Department, based on clinical symptoms. Patients that develop SARI
during their admission, or who are admitted through alternate routes,
are not included.
National Virus Reference Laboratory (NVRL): The NVRL routinely test
sentinel GP and non-sentinel respiratory specimens for SARS-CoV-2,
influenza, RSV and a panel of other seasonal respiratory viruses (ORV).
The NVRL report on influenza type/subtype of sentinel GP ARI and
non-sentinel respiratory specimens on a weekly basis.
National SARS-CoV-2 Whole Genome Sequencing Surveillance Programme
(NSWGSSP): The SARS-CoV-2 sequencing sampling framework currently
focuses on notified COVID-19 cases with severe disease (hospitalisation,
ICU admission) and deaths, COVID-19 outbreaks in health and care
settings, sentinel surveillance programmes in the community and acute
hospitals and targeted sequencing based on public health risk
assessment/clinical requests and virological changes e.g. new variant of
concern. There is typically a lag time of 1-3 weeks between a COVID-19
case being notified, selected for sequencing and SARS-CoV-2 sequencing
being completed. Therefore, the proportion of notified COVID-19 cases
notified in this time period from whom specimens are ultimately
sequenced will be higher than currently reported here. The HPSC link
sequencing results received from laboratories to epidemiological data on
COVID-19 cases reported on the CIDR system. This report summarises WGS
results and epidemiological data for COVID-19 cases that have been
sequenced in Ireland since week 51 2020 (specimen dates between
13/12/2020 and 27/09/2024). The SARS-CoV-2 sequencing results included
in this report reflect all data available as of 14/10/2024.
National SARS-CoV-2 Wastewater Surveillance Programme: A detailed
description of the process involved for wastewater collection, sampling
and analyses is available in the routinely published national SARS-CoV-2
wastewater surveillance programme reports available here
Appendix
Appendix Table 1: Notified
laboratory confirmed cases of COVID-19, influenza and RSV by age, sex
and HSE health region, from week 40 2024, to week 44 2024. Data source:
CIDR.
Number of cases (incidence per 100,000 population) |
|---|
| All pathogens | COVID-19 | Influenza | RSV |
|---|
Cases | 2,046 (39.7) | 1,629 (31.6) | 302 (5.9) | 115 (2.2) |
Age groups (years) |
|
|
|
|
<1 | 100 (173.0) | 66 (114.2) | 7 (12.1) | 27 (46.7) |
1-4 | 111 (46.7) | 31 (13.0) | 36 (15.2) | 44 (18.5) |
5-14 | 78 (10.9) | 19 (2.7) | 55 (7.7) | 4 (0.6) |
15-44 | 289 (14.0) | 217 (10.5) | 63 (3.0) | 9 (0.4) |
45-64 | 386 (29.8) | 318 (24.6) | 61 (4.7) | 7 (0.5) |
65-79 | 492 (82.6) | 443 (74.4) | 41 (6.9) | 8 (1.3) |
>80 | 590 (325.9) | 535 (295.5) | 39 (21.5) | 16 (8.8) |
Median age (IQR) | 68 (40-81) | 72 (51-82) | 40 (9-68) | 2 (1-56) |
Sex |
|
|
|
|
Male | 975 (38.3) | 763 (30.0) | 157 (6.2) | 55 (2.2) |
Female | 1,070 (41.1) | 866 (33.2) | 145 (5.6) | 59 (2.3) |
HSE Health Regions |
|
|
|
|
Dublin and North East | 435 (8.4) | 379 (31.9) | 39 (3.3) | 17 (1.4) |
Dublin and Midlands | 346 (6.7) | 271 (25.1) | 59 (5.5) | 16 (1.5) |
Dublin and South East | 447 (8.7) | 364 (37.5) | 57 (5.9) | 26 (2.7) |
South West | 321 (6.2) | 262 (35.4) | 57 (7.7) | 2 (0.3) |
Mid West | 168 (3.3) | 128 (31) | 24 (5.8) | 16 (3.9) |
West and North West | 329 (6.4) | 225 (29.6) | 66 (8.7) | 38 (5) |
Appendix Table 2:
Hospitalised laboratory confirmed cases of COVID-19, influenza and RSV
by age, sex and HSE health region, from week 40,2024, to week 44 2024.
Data source: CIDR.
Number of cases (incidence per 100,000 population) |
|---|
| All pathogens | COVID-19 | Influenza | RSV |
|---|
Cases | 839 (16.3) | 681 (13.2) | 97 (1.9) | 61 (1.2) |
Age groups (years) |
|
|
|
|
<1 | 48 (83.1) | 25 (43.3) | 5 (8.7) | 18 (31.1) |
1-4 | 49 (20.6) | 15 (6.3) | 13 (5.5) | 21 (8.8) |
5-14 | 44 (6.1) | 13 (1.8) | 27 (3.8) | 4 (0.6) |
15-44 | 70 (3.4) | 59 (2.9) | 8 (0.4) | 3 (0.1) |
45-64 | 125 (9.7) | 109 (8.4) | 11 (0.9) | 5 (0.4) |
65-79 | 220 (37.0) | 200 (33.6) | 15 (2.5) | 5 (0.8) |
>80 | 283 (156.3) | 260 (143.6) | 18 (9.9) | 5 (2.8) |
Median age (IQR) | 72 (44-83) | 75 (59-84) | 29 (7-74) | 2 (0-36) |
Sex |
|
|
|
|
Male | 430 (16.9) | 343 (13.5) | 56 (2.2) | 31 (1.2) |
Female | 409 (15.7) | 338 (13.0) | 41 (1.6) | 30 (1.2) |
HSE Health Regions |
|
|
|
|
Dublin and North East | 110 (2.1) | 93 (7.8) | 7 (0.6) | 10 (0.8) |
Dublin and Midlands | 149 (2.9) | 121 (11.2) | 20 (1.9) | 8 (0.7) |
Dublin and South East | 143 (2.8) | 114 (11.7) | 14 (1.4) | 15 (1.5) |
South West | 145 (2.8) | 128 (17.3) | 16 (2.2) | 1 (0.1) |
Mid West | 89 (1.7) | 70 (16.9) | 9 (2.2) | 10 (2.4) |
West and North West | 203 (3.9) | 155 (20.4) | 31 (4.1) | 17 (2.2) |
Appendix Table 3: Number
and percentage positive Sentinel GP ARI specimens by respiratory virus,
for week 43 2024, week 44 2024, and the 2024/2025 season. Data source:
NVRL.
| Week 43 2024 (N = 106) | Week 44 2024 (N = 37) | 2024/2025 (N = 496) |
|---|
Virus | Total positive | % positive | Total positive | % positive | Total positive | % positive |
|---|
SARS-CoV-2 | 8 | 7.5 | 1 | 2.7 | 30 | 6.0 |
Influenza Virus | 6 | 5.7 | 1 | 2.7 | 22 | 4.4 |
Respiratory Syncytial Virus (RSV) | 2 | 1.9 | 0 | 0.0 | 4 | 0.8 |
Rhino/enterovirus | 29 | 27.4 | 9 | 24.3 | 141 | 28.4 |
Adenovirus | 2 | 1.9 | 0 | 0.0 | 4 | 0.8 |
Bocavirus | 1 | 0.9 | 0 | 0.0 | 4 | 0.8 |
Human metapneumovirus (hMPV) | 0 | 0.0 | 0 | 0.0 | 0 | 0.0 |
Parainfluenza virus type 1 (PIV-1) | 0 | 0.0 | 3 | 8.1 | 8 | 1.6 |
Parainfluenza virus type 2 (PIV-2) | 2 | 1.9 | 0 | 0.0 | 9 | 1.8 |
Parainfluenza virus type 3 (PIV-3) | 1 | 0.9 | 1 | 2.7 | 5 | 1.0 |
Parainfluenza virus type 4 (PIV-4) | 0 | 0.0 | 0 | 0.0 | 4 | 0.8 |
Appendix Table 4: Number
and percentage positive NVRL non-sentinel respiratory specimens by
respiratory virus, week 43 2024, week 44 2024, and the 2024/2025 season.
Data source: NVRL.
| Week 43 2024 (N = 97) | Week 44 2024 (N = 101) | 2024/2025 (N = 727) |
|---|
Virus | Total positive | % positive | Total positive | % positive | Total positive | % positive |
|---|
SARS-CoV-2 | 8 | 8.2 | 7 | 6.9 | 51 | 7.0 |
Influenza Virus | 8 | 8.2 | 1 | 1.0 | 31 | 4.3 |
Respiratory Syncytial Virus (RSV) | 2 | 2.1 | 4 | 4.0 | 7 | 1.0 |
Rhino/enterovirus | 25 | 25.8 | 22 | 21.8 | 176 | 24.2 |
Adenovirus | 4 | 4.1 | 2 | 2.0 | 12 | 1.7 |
Bocavirus | 3 | 3.1 | 2 | 2.0 | 9 | 1.2 |
Human metapneumovirus (hMPV) | 0 | 0.0 | 0 | 0.0 | 0 | 0.0 |
Parainfluenza virus type 1 (PIV-1) | 1 | 1.0 | 4 | 4.0 | 14 | 1.9 |
Parainfluenza virus type 2 (PIV-2) | 4 | 4.1 | 2 | 2.0 | 11 | 1.5 |
Parainfluenza virus type 3 (PIV-3) | 0 | 0.0 | 0 | 0.0 | 0 | 0.0 |
Parainfluenza virus type 4 (PIV-4) | 4 | 4.1 | 2 | 2.0 | 9 | 1.2 |
Appendix Table 5:
Influenza type and sub-type distribution among sentinel GP ARI and
non-sentinel respiratory influenza positive specimens, for week 43 2024,
week 44 2024, and the 2024/2025 season. Data source: NVRL.
| | | Influenza A | Influenza B |
|---|
Time period | Specimen source | Total influenza positive | Total | A(H1)pdm09 | A(H3) | A(not subtyped) | Total | B Victoria | B (upspecified) |
|---|
Week 43 2024 | Sentinel GP ARI | 6 | 6 | 3 | 2 | 1 | 0 | 0 | 0 |
Non-sentinel respiratory | 8 | 7 | 0 | 6 | 1 | 1 | 0 | 1 |
Total | 14 | 13 | 3 | 8 | 2 | 1 | 0 | 1 |
Week 44 2024 | Sentinel GP ARI | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
Non-sentinel respiratory | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 |
Total | 2 | 1 | 1 | 0 | 0 | 1 | 0 | 1 |
Season to date | Sentinel GP ARI | 22 | 22 | 11 | 9 | 2 | 0 | 0 | 0 |
Non-sentinel respiratory | 31 | 25 | 15 | 8 | 2 | 6 | 0 | 6 |
Total | 53 | 47 | 26 | 17 | 4 | 6 | 0 | 6 |
Appendix Table 6: RSV type
distribution among sentinel GP ARI and non-sentinel respiratory RSV
positive specimens, for week 43, 2024 week 44 2024, and the 2024/2025
season. Data source: NVRL.
Time period | Specimen source | Total RSV positive | RSV A | RSV B | RSV (unspecified) |
|---|
Week 43 2024 | Sentinel GP ARI | 2 | 1 | 1 | 0 |
Non-sentinel respiratory | 2 | 1 | 1 | 0 |
Total | 4 | 2 | 2 | 0 |
Week 44 2024 | Sentinel GP ARI | 0 | 0 | 0 | 0 |
Non-sentinel respiratory | 4 | 1 | 3 | 0 |
Total | 4 | 1 | 3 | 0 |
Season to date | Sentinel GP ARI | 4 | 2 | 2 | 0 |
Non-sentinel respiratory | 7 | 3 | 4 | 0 |
Total | 11 | 5 | 6 | 0 |
