Integrated Respiratory Virus Bulletin, Ireland

Week 42 2025 (starting from 12/10/2025)

Report prepared on 23/10/2025



This interactive bulletin reports on the latest epidemiology of COVID-19, influenza, respiratory syncytial virus (RSV) and other respiratory viruses (ORVs) in Ireland. HPSC monitors several integrated respiratory virus surveillance systems that are included in this bulletin. This report will be published weekly during the winter season (week 40 to week 20).

How to use this interactive bulletin

For interactive graphs – data values and labels can be seen by hovering over graph lines or bars. Specific categories can be selected or deselected by clicking on the relevant category in the legend. Readers can skip to specific sections by clicking on the table of contents to the left of the screen.

1 Key messages

COVID-19 activity decreased across all indicators and remained at moderate levels. Influenza and RSV activity were at low levels, but both are increasing. Rhino/enteroviruses are circulating at high levels.

Vaccination/immunisation remains one of the most effective ways to reduce severe illness from flu, RSV, and COVID-19. Strong surveillance, immunisation programmes, and healthcare system readiness (including Infection Prevention Control) are key to protecting public health.

1.1 Summary for week 42 2025

Syndromic surveillance

The sentinel GP Acute Respiratory Infection (ARI) consultation rate was stable and below baseline at 62.2/100,000 population during week 42 2025, compared to 67.2.1/100,000 in week 41. The highest rates were in those aged <5 years at 184.0/100,000 population. Sentinel GP influenza, SARS-CoV-2 and RSV test positivity levels were below the 10% threshold. Rhino/enterovirus test positivity has been high in recent weeks and was at 41.3% in week 42. All other seasonal respiratory pathogens’ test positivity levels were below the 10% threshold in week 42. The percentage of GP Out-Of-Hours (GP-OOH) calls for self-reported cough was above the overall baseline for all ages during week 42. The percentage of self-reported influenza calls was below the overall baseline for all ages during week 42.

COVID-19

COVID-19 activity remained at moderate levels and decreased across all indicators in week 42 2025. The overall incidence was 23.8/100,000 population. COVID-19 cases decreased by 21.0%, from 446 cases notified in week 41 to 352 cases in week 42. Hospitalisations decreased by 33.0%, from 166 cases in week 41 to 112 cases in week 42. There were no ICU admissions and two deaths notified in week 42. COVID-19 hospital bed occupancy remained stable in recent weeks. XFG remained the predominant SARS-CoV-2 variant. XFG accounted for 82.9% of sequences between weeks 34 and 38 2025, while NB.1.8.1 accounted for 13.3% of samples sequenced during the same time period.

Influenza

Influenza activity increased but was below baseline levels in week 42 2025. There were 119 influenza cases were notified in week 42, compared to 88 in week 41. The overall incidence was 4.8/100,000 population. There were 17 influenza hospitalisations and no influenza ICU admissions. One death was notified during week 42 2025. Influenza hospital bed occupancy remained low and stable in recent weeks. Influenza B, influenza A(H1)pdm09 and influenza A(H3) detections were all reported at low levels in recent weeks.

RSV

RSV activity was at low levels but increased in week 42 2025. There were 40 cases notified compared to 17 in week 41 2025. The overall incidence was 1.5/100,000 population. There were 17 RSV hospitalisations and no ICU admissions or deaths reported in week 42. RSV hospital bed occupancy remained low and stable in recent weeks.

Severe Acute Respiratory Infection (SARI)

In week 42 2025, although SARI activity slightly increased, it remained at low levels in Ireland; 75 SARI cases were admitted across all four sentinel hospital sites, compared to 55 cases reported from three of the four sentinel sites in week 41. SARS-CoV-2, influenza and RSV test positivity remained at low levels in week 42. Influenza and RSV test positivity increased slightly in week 42 to 5.6% and 2.8%, respectively. SARS-CoV-2 test positivity declined from 3.7% in week 41 to 2.8% in week 42.

Outbreaks

There were 20 acute respiratory infection (ARI) outbreaks notified during week 42 2025 (15 COVID-19, 1 RSV, and 4 other ARI outbreaks), an increase from the 19 reported during week 41. Of the 20 respiratory virus outbreaks, 13 were reported in nursing homes, seven in hospitals, 2 in community/long-stay units, 2 in residential institutions and 1 in another healthcare service. There were no influenza outbreaks reported in week 42.

Excess mortality

The latest HPSC excess mortality analysis of all registered deaths in Ireland up to October 19th, 2025 using the standardised European EuroMOMO algorithm shows that there has been no excess mortality reported for the entire Irish population (all ages) during the 2025 summer period (week 21 2025 onwards) and most recently in week 41 2025.

Note: These data are provisional due to the time delay with death registration in Ireland. A country-specific adjustment function was applied to correct for the typical delay in registrations of deaths in Ireland. Nonetheless, estimates of excess mortality for the most recent weeks are reported with some uncertainty and should be interpreted with caution.


2 Syndromic and case surveillance

2.1 Sentinel GP Acute Respiratory Infection (ARI) surveillance

2.1.1 Sentinel GP ARI

1: Sentinel GP ARI consultation rate per 100,000 population overall (with associated number of influenza, RSV and SARS-CoV-2 positive sentinel GP ARI specimens) in Ireland, from week 40 2024 to week 42 2025. Data source: Sentinel GP surveillance system and National Virus Reference Laboratory (NVRL)


2.1.2 Sentinel GP ARI by age group

2: Sentinel GP ARI consultation incidence by age-group in Ireland, from week 40 2024 to week 42 2025. Data source: Sentinel GP surveillance system


2.2 GP out-of-hours surveillance


3: Percentage of calls to GP out-of-hours services for self-reported cough and self-reported influenza in Ireland for all ages and by age-group, by week of call, from week 40 2024 to week 42 2025. Data source: Participating GP Out-of-Hours services in Ireland


2.3 Confirmed cases

2.3.1 Laboratory-confirmed cases: COVID-19, influenza, RSV

4: Number of notified cases of laboratory-confirmed COVID-19, influenza and RSV by week of notification in Ireland, between week 40 2024 and week 42 2025. Data source: CIDR



2.3.2 COVID-19 seasonal trends

5: Number of notified cases of laboratory-confirmed COVID-19 by week of notification in Ireland, between week 40 2022 and week 42 2025. Data source: CIDR

Please note: where there is a 53 week year, the average of week 52 and week 53 is taken.


2.3.3 Influenza seasonal trends

6: Number of notified cases of laboratory-confirmed influenza by week of notification in Ireland, between week 40 2022 and week 42 2025. Data source: CIDR

Please note: where there is a 53 week year, the average of week 52 and week 53 is taken.


2.3.4 RSV seasonal trends

7: Number of notified cases of laboratory-confirmed RSV by week of notification in Ireland, between week 40 2022 and week 42 2025. Data source: CIDR

Please note: where there is a 53 week year, the average of week 52 and week 53 is taken.


Table 1: Number and incidence of notified laboratory-confirmed cases of COVID-19, influenza and RSV by age, sex and HSE Health Region Ireland, week 42 2025. Data source: CIDR

Number of cases (incidence per 100,000 population)

All pathogens

COVID-19

Influenza

RSV

Cases

511 (9.9)

352 (6.8)

119 (2.3)

40 (0.8)

Age groups (years)

<1

21 (36.3)

14 (24.2)

4 (6.9)

3 (5.2)

1-4

48 (20.2)

3 (1.3)

20 (8.4)

25 (10.5)

5-14

28 (3.9)

3 (0.4)

23 (3.2)

2 (0.3)

15-44

92 (4.5)

53 (2.6)

35 (1.7)

4 (0.2)

45-64

79 (6.1)

65 (5.0)

13 (1.0)

1 (0.1)

65-79

120 (20.2)

101 (17.0)

18 (3.0)

1 (0.2)

>80

123 (67.9)

113 (62.4)

6 (3.3)

4 (2.2)

Median age (IQR)

61 (24-79)

72 (49-82)

21 (5-56)

2 (1-8)

Sex

Male

252 (9.9)

173 (6.8)

59 (2.3)

20 (0.8)

Female

259 (9.9)

179 (6.9)

60 (2.3)

20 (0.8)

HSE Health Regions

Dublin and North East

97 (1.9)

74 (6.2)

17 (1.4)

6 (0.5)

Dublin and Midlands

102 (2)

65 (6)

29 (2.7)

8 (0.7)

Dublin and South East

121 (2.3)

86 (8.9)

29 (3)

6 (0.6)

South West

88 (1.7)

60 (8.1)

24 (3.2)

4 (0.5)

Mid West

34 (0.7)

25 (6.1)

3 (0.7)

6 (1.5)

West and North West

68 (1.3)

41 (5.4)

17 (2.2)

10 (1.3)


An overview of the characteristics of all cases reported since the start of the season is presented in Appendix A1.


Figure 8: Incidence of Influenza and RSV notified cases by week of notification in Ireland for the 2025/2026 season with comparison to the 2024/2025 season, thresholds (baseline-very high) are defined using the Moving Epidemic Method. Data source: CIDR


9: Incidence of notified cases of laboratory-confirmed COVID-19, influenza and RSV by HSE Health Region for the last 12 weeks by week of notification, from week 31 2025 to week 42 2025. Data source: CIDR


10: Age and sex-specific incidence of notified cases of laboratory-confirmed COVID-19, influenza and RSV in Ireland, from week 40 2025 to week 42 2025. Data source: CIDR

Please note that the scale on the x-axis may differ by pathogen, to account for differences in the number of cases notified for each pathogen.


11: Incidence of notified cases of laboratory-confirmed COVID-19, influenza and RSV in Ireland, by age group and week of notification, from week 40 2024 to week 42 2025. Data source: CIDR


3 Severity and impact

3.1 Sentinel Severe Acute Respiratory Infection (SARI) surveillance

3.1.1 SARI cases numbers by site

12: Number of SARI hospitalised cases by week of hospital admission in Ireland, from week 40 2024 to week 42 2025. Data source: Sentinel SARI surveillance system

Note: In weeks 6&7, 13&14, 30&31 and 41 2025 one or more SARI hospital sites did not report data. Children’s Health Ireland Crumlin (CHI-C) included from week 40 2025.

3.1.2 Incidence rate hospital admissions

13: SARI age-specific incidence rates per 1,000 hospital admissions by week of hospital admission in Ireland, from week 40 2024 to week 42 2025. Data source: Sentinel SARI surveillance system

*SARI cases are recruited from emergency department admissions only in SVUH, SJH and UHL. In CHI-C cases are recruited from emergency department and non-emergency department routes (e.g. transfer from other hospitals, direct admission to speciality wards), excluding day cases and elective admissions.

Note: In weeks 6&7, 13&14, 30&31 and 41 2025 one or more SARI hospital sites did not report data. CHI-C included from week 40 2025.


14: Percentage of SARI cases with a positive laboratory test result for SARS-CoV-2, influenza or RSV by week of hospital admission in Ireland, from week 40 2025 to week 42 2025. Data source: Sentinel SARI surveillance system

Note: In weeks 6&7, 13&14, 30&31 and 41 2025 one or more SARI hospital sites did not report data. CHI-C included from week 40 2025.


3.2 Emergency department cases

3.2.1 Incidence of emergency department cases

15: Incidence of emergency department cases of laboratory-confirmed COVID-19, influenza and RSV by week of notification in Ireland, from week 40 2024 to week 42 2025. Data source: CIDR


3.2.2 Number of emergency department cases


16: Number of emergency department cases of laboratory-confirmed COVID-19, influenza and RSV by week of notification in Ireland, from week 40 2024 to week 42 2025. Data source: CIDR


3.3 Hospital admissions

3.3.1 Incidence of hospitalised cases


17: Incidence of hospitalised cases of laboratory-confirmed COVID-19, influenza and RSV by week of notification in Ireland, from week 40 2024 to week 42 2025. Data source: CIDR


3.3.2 Number of hospitalised cases


18: Number of hospitalised cases of laboratory-confirmed COVID-19, influenza and RSV by week of notification in Ireland, from week 40 2024 to week 42 2025. Data source: CIDR


Table 2: Number and incidence of hospitalised cases of laboratory-confirmed COVID-19, influenza and RSV by age, sex and HSE Health Region Ireland, week 42 2025. Data source: CIDR

Number of cases (incidence per 100,000 population)

All pathogens

COVID-19

Influenza

RSV

Cases

146 (2.8)

112 (2.2)

17 (0.3)

17 (0.3)

Age groups (years)

<1

8 (13.8)

4 (6.9)

2 (3.5)

2 (3.5)

1-4

13 (5.5)

0 (0.0)

2 (0.8)

11 (4.6)

5-14

9 (1.3)

0 (0.0)

7 (1.0)

2 (0.3)

15-44

14 (0.7)

10 (0.5)

3 (0.1)

1 (0.0)

45-64

18 (1.4)

18 (1.4)

0 (0.0)

0 (0.0)

65-79

42 (7.1)

39 (6.6)

3 (0.5)

0 (0.0)

>80

42 (23.2)

41 (22.6)

0 (0.0)

1 (0.6)

Median age (IQR)

71 (34-81)

74 (62-82)

6 (5-38)

2 (1-3)

Sex

Male

75 (2.9)

57 (2.2)

9 (0.4)

9 (0.4)

Female

71 (2.7)

55 (2.1)

8 (0.3)

8 (0.3)

HSE Health Regions

Dublin and North East

20 (0.4)

17 (1.4)

1 (0.1)

2 (0.2)

Dublin and Midlands

28 (0.5)

20 (1.9)

3 (0.3)

5 (0.5)

Dublin and South East

18 (0.3)

12 (1.2)

5 (0.5)

1 (0.1)

South West

32 (0.6)

30 (4.1)

2 (0.3)

0 (0)

Mid West

14 (0.3)

10 (2.4)

1 (0.2)

3 (0.7)

West and North West

34 (0.7)

23 (3)

5 (0.7)

6 (0.8)


An overview of the characteristics of all hospitalised cases reported since the start of the season is presented in Appendix A2.


19: Age and sex-specific incidence of hospitalised cases of laboratory-confirmed COVID-19, influenza and RSV in Ireland, from week 40 2025 to week 42 2025. Data source: CIDR

Please note that the scale on the x-axis may differ by pathogen, to account for differences in the number of cases notified for each pathogen.


20: Incidence of hospitalised cases of laboratory-confirmed COVID-19, influenza and RSV by age group in Ireland, from week 40 2024 to week 42 2025. Data source: CIDR


3.3.3 Bed occupancy in acute inpatient settings

3.3.3.1 Number of acute hospital beds occupied last 30 days

21: Daily number of acute hospital beds occupied by patients with laboratory-confirmed COVID-19, influenza and RSV in Ireland in the last 30 days. Data source: HSE Planning and Performance Unit


3.3.3.2 Number of acute hospital beds occupied week 40, 2024 onwards

22: Daily number of acute hospital beds occupied by patients with laboratory-confirmed COVID-19, influenza and RSV in Ireland from week 40 2024 to week 42 2025. Data source: HSE Planning and Performance Unit


3.4 Intensive Care Unit (ICU) admissions


23: Number of ICU admissions due to laboratory-confirmed COVID-19, influenza and RSV by week of admission to ICU in Ireland, week 40 2024 to week 42 2025. Data source: CIDR


Table 3: Number and incidence of ICU admissions due to COVID-19, influenza and RSV in Ireland by week of admission to ICU, week 42 2025, and season to date (from week 40 2025 to week 42 2025). Data source: CIDR

Week 42, 2025

Week 40, 2025 to week 42, 2025

Number of ICU admissionsa

ICU admissions per 1,000 hospitalisations

% of hospitalised cases admitted to ICU

Number of ICU admissions

ICU admissions per 1,000 hospitalisations

% of hospitalised cases admitted to ICU

COVID-19

0

0

0

4

8.7

0.9

Influenza

0

0

0

1

25.0

2.5

RSV

0

0

0

0

0.0

0.0

aICU admissions include all cases admitted to ICU due to COVID-19, influenza and RSV


3.5 Mortality

3.5.1 Deaths among confirmed cases


24: Number of COVID-19, influenza and RSV deaths by week of death in Ireland, week 40 2024 to week 42 2025. Data source: CIDR


Table 4: Number and incidence of COVID-19, influenza and RSV deaths in Ireland, for the season to date (from week 40 2025 to week 42 2025). Data source: CIDR

COVID-19

Influenza

RSV

Age (years)

Number of deaths

Incidence per 100,000 population

Number of deaths

Incidence per 100,000 population

Number of deaths

Incidence per 100,000 population

<65

1

0.0

1

0

0

0.0

≥65

8

1.0

0

0

1

0.1

Total

9

0.2

1

0

1

0.0


4 Outbreaks


25: Number of COVID-19, influenza, RSV and other ARI outbreaks reported in health and care settings by week outbreak reported in Ireland, from week 40 2024 to week 42 2025. Data source: CIDR


Table 5: Number of COVID-19, influenza, RSV and other ARI outbreaks reported by setting in Ireland, week 42 2025 and the season to date (from week 40 2025 to week 42 2025). Data source: CIDR

Week 42 2025

Outbreak location

COVID-19

Influenza

RSV

ARI

Total week 42, 2025

Total week 40, 2025 to week 42, 2025

Comm. hosp/long-stay unit

2

0

0

0

2

9

Hospital

5

0

0

1

6

31

Nursing home

7

0

1

2

10

37

Other healthcare service

1

0

0

0

1

3

Residential institution

0

0

0

1

1

9

Total health care settings

15

0

1

4

20

89

Total non health care settings

0

0

0

0

0

0

Total

15

0

1

4

20

89


26: Number of COVID-19, influenza, RSV and other ARI outbreaks by HSE Health Region, Ireland week 42 2025. Data source: CIDR


5 Virology and genomic surveillance

5.1 Virus test positivity and dominant virus types/subtypes in circulation


Table 6: Number and percentage positive SARS-CoV-2, influenza and RSV specimens by surveillance source Ireland, week 42 2025. Data source: CIDR, NVRL

SARS-CoV-2

Influenza

RSV

Surveillance system

Total tested

Total positive

% positive

Total positive

% positive

Total positive

% positive

NVRL Sentinel GP ARI

92

6

6.5

9

9.8

3

3.3

NVRL non-sentinel respiratory

153

7

4.6

1

0.7

0

0.0


27: Sentinel GP ARI specimens and non-sentinel respiratory specimen test positivity for SARS-CoV-2, influenza, RSV and other respiratory viruses by week of specimen collection in Ireland, week 21 2025 to week 42 2025. PIV = parainfluenza viruses. Data source: NVRL


28: Number of sentinel GP ARI and non-sentinel respiratory influenza positive specimens and laboratory-confirmed influenza notifications by influenza type/sub-type and by week of specimen collection in Ireland, week 40 2024 to week 42 2025. Data source: NVRL, CIDR


Underlying data on the total number of tests, total number of positives and percentage positive by week and for the season to date for each virus for both sentinel and non-sentinel specimens are presented in Appendix A3, Appendix A4, Appendix A5, Appendix A6


5.2 SARS-CoV-2 genomic data


29: SARS-CoV-2 whole genome sequencing results by week of specimen collection in Ireland, from week 40 2024 to week 39 2025


Note: There is typically a lag time of 1-3 weeks between a case being notified, selected for sequencing and sequencing being completed. Therefore the percentage of cases notified in this time period who are ultimately sequenced will be higher than reported here.


30: SARS-CoV-2 whole genome sequencing results by week of specimen collection in Ireland, from week 35 2025 to week 39 2025


6 SARS-CoV-2 wastewater surveillance


31: Approximate location of wastewater catchment areas and SARS-CoV-2 viral loads (gc/day) in wastewater and percentage change compared to previous week, National Wastewater Surveillance Programme Ireland, week 42 2025


Figure 32: Weekly distribution of population-normalised SARS-CoV-2 viral load (gc/day/person), National Wastewater Surveillance Programme Ireland, May 2021 to week 42 2025


9 Technical notes

General

Data are provisional and subject to ongoing review, validation and update. As a result, figures in this report may differ from previously published figures.

The weekly calendar runs from Sunday to Saturday for respiratory virus notifications on CIDR (as per the Infectious Disease Regulations 1982 and subsequent amendments) and Monday to Sunday for the sentinel GP and SARI surveillance systems (as per ISO week). Further information on epidemiological dates and weeks can be found on the HPSC website.

Definitions

The case definitions for COVID-19, influenza and RSV are available here. Only data on laboratory-confirmed cases, including cases diagnosed using near patient molecular tests, are included in this report.

Sentinel GP ARI consultations are consultations to sentinel GP practices for Acute Respiratory Infection (ARI), with ARI defined as Sudden onset of symptoms AND at least one of the following four respiratory symptoms: Cough, sore throat, shortness of breath, coryza AND a clinician’s judgement that the illness is due to an infection.

GP out of hours calls refer to calls to GP out of hours services from persons with self-reported clinical symptoms of ‘flu’ or ‘cough’.

Emergency Department cases refer to cases treated in emergency departments, with no indication on CIDR that they have subsequently been admitted to hospital.

Hospitalised cases are inpatients with laboratory-confirmed SARS-CoV-2, influenza or RSV and includes inpatients with incidental infections, where the infection is not the reason for their admission.

Bed occupancy refers to the number of laboratory-confirmed cases admitted to acute inpatient sites at 08:00 hrs on the day of reporting.

A SARI case is defined as a person hospitalised for at least 24 hours with acute respiratory infection and onset of symptoms within 14 days prior to hospital admission, with at least one of the following symptoms: cough, fever, shortness of breath OR sudden onset of anosmia, ageusia or dysgeusia.

The case definition was adapted for infants aged <6 months to include increased work of breathing and apnoea as relevant symptoms, this revised definition was applied to cases admitted from week 40 2025. A SARI case refers to an individual patient episode of care.

As of September 2024, ICU admissions for COVID-19, influenza and RSV refer to those admitted to intensive care where COVID-19, influenza or RSV were the primary or contributory cause of admission. Prior to September 2024, ICU admissions for influenza and RSV included all admissions where the patient tested positive for influenza or RSV, irrespective of whether these pathogens were the cause of admission.

COVID-19, influenza and RSV deaths are defined as a death in a person with laboratory-confirmed COVID-19, influenza or RSV infection. see case definitions (this includes cases detected postmortem)

Moving Epidemic Method (MEM) thresholds have been established to assess the intensity of respiratory virus activity. Thresholds have been calculated using five years of historical notification data from 2017/2018 to 2024/2025. The seasons 2020/2021 and 2021/2022 were excluded, due to low influenza and RSV in circulation during the COVID-19 pandemic. SARS-CoV-2 has a bimodal epidemic pattern and therefore is unsuitable for threshold analysis using the MEM. Further details

Test Positivity: Positive tests refer to all positive specimens and includes duplicates and individuals who were re-tested.

Outbreaks are defined as two or more cases of acute respiratory infection with the same pathogen (SARS-CoV-2, influenza or respiratory syncytial virus (RSV)) confirmed by a laboratory test or near patient test carried out by a health professional, and where there is reason to consider that these cases may be epidemiologically linked in place and time.

Other Acute Respiratory Infection (ARI) outbreaks are defined as: Two or more cases of acute respiratory infection arising within the same 48hr period epidemiologically linked in place: Outbreaks are classified as Suspect ARI outbreaks, where testing has not been completed, is pending or has been negative for Influenza, RSV and SARS-CoV-2. Outbreaks are classified as confirmed if other respiratory pathogens (ORVs), e.g. Rhinovirus, hMPV, Coronavirus OC43 etc are identified via laboratory confirmation. The outbreak data presented in this report includes both confirmed and suspect outbreaks.

Variant working definitions for ‘SARS-CoV-2 variants of concern’ (VOC), ‘SARS-CoV-2 variants of interest’ (VOI) and ‘SARS-CoV-2 variants under monitoring’ (VUM) are available on the WHO website and ECDC website.

Data sources

The Computerised Infectious Disease Reporting (CIDR) system: CIDR is the source of statutory notification data on laboratory-confirmed COVID-19, influenza, RSV (including data on notified, emergency department, hospitalised and ICU cases and data on cases who died) and data on outbreaks.

The type/subtype of laboratory-confirmed influenza notifications are reported on the CIDR system. The number of cases hospitalised and admitted to ICU described in this report relate only to cases notified during this reporting period, with known hospitalisation/ICU status at the time of reporting.

Regional Departments of Public Health currently prioritise the investigation and reporting of outbreaks in settings that benefit most from public health and clinical intervention. The outbreak data reported here focuses on these key settings/groups. These settings include acute hospitals, nursing homes, community hospital/long-stay units, residential institutions (centres for disabilities, centres for older people, children’s/TUSLA residential centres and mental health facilities) and other healthcare settings.

Population denominator data for analyses of CIDR data on notified, emergency department, hospitalised and ICU cases and deaths are taken from Census 2022.

Sentinel GP surveillance system: This includes 100 participating general practices (located in all HSE Health Regions). These practices report electronically on a weekly basis, the number of patients who consulted with acute respiratory infection (ARI) and influenza-like illness (ILI) (identified using International Classification of Primary Care 2 codes R74 and R80). These practices provide overall and age-stratified denominator data on the number of registered patients who have sought care at the practice during the previous three years. The combined patient population in these practices is estimated to be approximately 10% of the national population. Sentinel GPs take a combined nose and throat swab from the first five patients attending their practice each week who meet the ARI case definition and send these to the NVRL for testing.

GP Out-of-hours (GPOOHs) services: Five out of 14 GPOOHs services provide weekly data on the total and age-stratified number of out of hours calls for 1) all reasons, 2) for self-reported cough and 3) for self-reported flu. The denominator for calculations of percentage of calls is the total number of calls for all reasons.

The HSE Performance Management and Improvement Unit (PMIU) provides daily data on bed occupancy (the number of currents inpatients with laboratory-confirmed COVID-19, influenza and RSV).

Severe Acute Respiratory Infections (SARI) surveillance system: SARI cases are identified based on clinical symptoms from new admissions through the Emergency Department in SVUH, SJH and UHL. In CHI-C cases are recruited from emergency department and non-emergency department routes (e.g. transfer from other hospitals, direct admission to speciality wards), excluding day cases and elective admissions.

National Virus Reference Laboratory (NVRL): The NVRL routinely test sentinel GP and non-sentinel respiratory specimens for SARS-CoV-2, influenza, RSV and a panel of other seasonal respiratory viruses (ORV). The NVRL report on influenza type/subtype of sentinel GP ARI and non-sentinel respiratory specimens on a weekly basis.

The SARS-CoV-2 genomic sequencing sampling framework currently focuses on notified COVID-19 cases with severe disease (hospitalisation, ICU admission) and deaths, COVID-19 outbreaks in health and care settings, sentinel surveillance programmes in the community and acute hospitals and targeted sequencing based on public health risk assessment/clinical requests and virological changes e.g. new variant of concern. There is typically a lag time of 1-3 weeks between a COVID-19 case being notified, selected for sequencing and SARS-CoV-2 sequencing being completed. Therefore, the proportion of notified COVID-19 cases notified in this time period from whom specimens are ultimately sequenced will be higher than currently reported here. The HPSC link sequencing results received from laboratories to epidemiological data on COVID-19 cases reported on the CIDR system. This report summarises WGS results and epidemiological data for COVID-19 cases that have been sequenced in Ireland since week 40 2024 (specimen dates between 29/09/2024 and 27/09/2025). The SARS-CoV-2 sequencing results included in this report reflect all data available as of 17/10/2025.

National SARS-CoV-2 Wastewater Surveillance Programme: A detailed description of the process involved for wastewater collection, sampling and analyses is available in the routinely published [National SARS-CoV-2 Wastewater Surveillance Programme Report] (https://www.hpsc.ie/a-z/nationalwastewatersurveillanceprogramme/)


10 Appendix

Appendix Table 1: Number and incidence of notified laboratory-confirmed cases of COVID-19, influenza and RSV by age, sex and HSE Health Region, from week 40 2025, to week 42 2025. Data source: CIDR

Number of cases (incidence per 100,000 population)

All pathogens

COVID-19

Influenza

RSV

Cases

1,548 (30.1)

1,225 (23.8)

248 (4.8)

75 (1.5)

Age groups (years)

<1

74 (128.0)

50 (86.5)

8 (13.8)

16 (27.7)

1-4

94 (39.6)

18 (7.6)

38 (16.0)

38 (16.0)

5-14

55 (7.7)

14 (2.0)

39 (5.4)

2 (0.3)

15-44

255 (12.3)

178 (8.6)

73 (3.5)

4 (0.2)

45-64

244 (18.9)

209 (16.2)

33 (2.6)

2 (0.2)

65-79

410 (68.9)

366 (61.5)

40 (6.7)

4 (0.7)

>80

416 (229.8)

390 (215.4)

17 (9.4)

9 (5.0)

Median age (IQR)

68 (37-80)

72 (50-82)

28 (6-61)

1 (1-11)

Sex

Male

763 (30.0)

601 (23.6)

124 (4.9)

38 (1.5)

Female

784 (30.1)

624 (24.0)

124 (4.8)

36 (1.4)

HSE Health Regions

Dublin and North East

340 (6.6)

291 (24.5)

41 (3.5)

8 (0.7)

Dublin and Midlands

269 (5.2)

211 (19.6)

45 (4.2)

13 (1.2)

Dublin and South East

334 (6.5)

263 (27.1)

56 (5.8)

15 (1.5)

South West

275 (5.3)

205 (27.7)

64 (8.6)

6 (0.8)

Mid West

117 (2.3)

104 (25.2)

6 (1.5)

7 (1.7)

West and North West

212 (4.1)

150 (19.7)

36 (4.7)

26 (3.4)


Appendix Table 2: Number and incidence of notified hospitalised laboratory-confirmed cases of COVID-19, influenza and RSV by age, sex and HSE Health Region from week 40 2025 to week 42 2025. Data source: CIDR

Number of cases (incidence per 100,000 population)

All pathogens

COVID-19

Influenza

RSV

Cases

535 (10.4)

462 (9.0)

40 (0.8)

33 (0.6)

Age groups (years)

<1

32 (55.4)

19 (32.9)

3 (5.2)

10 (17.3)

1-4

30 (12.6)

7 (2.9)

5 (2.1)

18 (7.6)

5-14

17 (2.4)

6 (0.8)

9 (1.3)

2 (0.3)

15-44

51 (2.5)

43 (2.1)

7 (0.3)

1 (0.0)

45-64

73 (5.6)

69 (5.3)

4 (0.3)

0 (0.0)

65-79

166 (27.9)

157 (26.4)

9 (1.5)

0 (0.0)

>80

166 (91.7)

161 (88.9)

3 (1.7)

2 (1.1)

Median age (IQR)

72 (46-82)

75 (57-83)

28 (5-68)

1 (0-3)

Sex

Male

290 (11.4)

250 (9.8)

22 (0.9)

18 (0.7)

Female

244 (9.4)

212 (8.1)

18 (0.7)

14 (0.5)

HSE Health Regions

Dublin and North East

71 (1.4)

66 (5.6)

2 (0.2)

3 (0.3)

Dublin and Midlands

125 (2.4)

106 (9.8)

9 (0.8)

10 (0.9)

Dublin and South East

79 (1.5)

62 (6.4)

11 (1.1)

6 (0.6)

South West

95 (1.8)

89 (12)

6 (0.8)

0 (0)

Mid West

56 (1.1)

49 (11.9)

3 (0.7)

4 (1)

West and North West

109 (2.1)

90 (11.8)

9 (1.2)

10 (1.3)


Appendix Table 3: Number and percentage of test positive Sentinel GP ARI specimens by respiratory virus for the most recent two weeks 41 2025, week 42 2025 and the 2025/2026 season to date. Data source: NVRL

Week 41 2025 (N = 126)

Week 42 2025 (N = 92)

2025/2026 (N = 345)

Virus

Total positive

% positive

Total positive

% positive

Total positive

% positive

SARS-CoV-2

9

7.1

6

6.5

27

7.8

Influenza Virus

5

4.0

9

9.8

16

4.6

Respiratory Syncytial Virus (RSV)

1

0.8

3

3.3

4

1.2

Rhino/enterovirus

48

38.1

38

41.3

138

40.0

Adenovirus

3

2.4

1

1.1

5

1.4

Bocavirus

0

0.0

0

0.0

0

0.0

Parainfluenza virus type 1 (PIV-1)

0

0.0

0

0.0

0

0.0

Parainfluenza virus type 2 (PIV-2)

0

0.0

0

0.0

0

0.0

Parainfluenza virus type 3 (PIV-3)

2

1.6

0

0.0

2

0.6

Parainfluenza virus type 4 (PIV-4)

3

2.4

1

1.1

10

2.9


Appendix Table 4: Number and percentage positive NVRL non-sentinel respiratory specimens by respiratory virus, week 41 2025, week 42 2025 and the 2025/2026 season to date. Data source: NVRL

Week 41 2025 (N = 225)

Week 42 2025 (N = 153)

2025/2026 (N = 602)

Virus

Total positive

% positive

Total positive

% positive

Total positive

% positive

SARS-CoV-2

17

7.6

7

4.6

42

7.0

Influenza Virus

6

2.7

1

0.7

19

3.2

Respiratory Syncytial Virus (RSV)

1

0.4

0

0.0

5

0.8

Rhino/enterovirus

52

23.1

43

28.1

139

23.1

Adenovirus

1

0.4

0

0.0

5

0.8

Bocavirus

2

0.9

0

0.0

3

0.5

Parainfluenza virus type 1 (PIV-1)

0

0.0

0

0.0

1

0.2

Parainfluenza virus type 2 (PIV-2)

0

0.0

0

0.0

0

0.0

Parainfluenza virus type 3 (PIV-3)

3

1.3

2

1.3

6

1.0

Parainfluenza virus type 4 (PIV-4)

1

0.4

3

2.0

4

0.7


Appendix Table 5: Influenza type and sub-type distribution among sentinel GP ARI and non-sentinel respiratory influenza positive specimens for the most recent two weeks 41 2025, week 42 2025 and the 2025/2026 season to date. Data source: NVRL

Influenza A

Influenza B

Time period

Specimen source

Total influenza positive

Total

A(H1)pdm09

A(H3)

A(not subtyped)

Total

B Victoria

B (unspecified)

Week 41 2025

Sentinel GP ARI

5

5

1

4

0

0

0

0

Non-sentinel respiratory

6

5

3

2

0

1

0

1

Total

11

10

4

6

0

1

0

1

Week 42 2025

Sentinel GP ARI

9

9

3

6

0

0

0

0

Non-sentinel respiratory

1

1

1

0

0

0

0

0

Total

10

10

4

6

0

0

0

0

Season to date

Sentinel GP ARI

16

16

6

10

0

0

0

0

Non-sentinel respiratory

19

18

9

9

0

1

0

1

Total

35

34

15

19

0

1

0

1


Appendix Table 6: RSV type distribution among sentinel GP ARI and non-sentinel respiratory RSV positive specimens for the most recent two weeks 41 2025, week 42 2025 and the 2025/2026 season to date. Data source: NVRL

Time period

Specimen source

Total RSV positive

RSV A

RSV B

RSV (unspecified)

Week 41 2025

Sentinel GP ARI

1

0

1

0

Non-sentinel respiratory

1

0

1

0

Total

2

0

2

0

Week 42 2025

Sentinel GP ARI

3

0

3

0

Non-sentinel respiratory

0

0

0

0

Total

3

0

3

0

Season to date

Sentinel GP ARI

4

0

4

0

Non-sentinel respiratory

5

1

4

0

Total

9

1

8

0